SemanticSBML publications

Publications and theses related to semanticSBML

  1. Retrieval, alignment, and clustering of computational models based on semantic annotations
    Schulz M., Krause F., Le Novere N., Klipp E., Liebermeister W. (2011), Molecular Systems Biology 7(512). [pdf]
  2. Parameter balancing in kinetic models of cell metabolism
    Lubitz T., Schulz M., Klipp E., Liebermeister W. (2010), J. Phys. Chem. B 114(49):16298-16303.
  3. Parameter balancing in kinetic models
    Lubitz T. (2010), Master thesis [pdf]
  4. Annotation and merging of SBML models with semanticSBML
    Krause F, Uhlendorf J., Lubitz T., Schulz M., Klipp E., Liebermeister W. (2009)
    Bioinformatics 2009, doi:10.1093/bioinformatics/btp642 [html]
  5. Combination of mathematical model of signaling pathways
    Kosenko A. (2009), Bachelor thesis [pdf]
  6. A simple clustering of the BioModels database using semanticSBML
    Krause F. and Liebermeister W. (2009), Poster on [Nature Precedings ]
  7. SemanticSBML: a tool for annotating, checking, and merging of biochemical models in SBML format
    Liebermeister W., Krause F., Uhlendorf J., Lubitz T., Klipp E. (2009), Poster on [Nature Precedings ]
  8. SemanticSBML, a Tool for Creating, Checking, Annotating and Merging of SBML Documents
    Krause F. (2008), Master thesis [pdf]
  9. Validity and combination of biochemical models
    Liebermeister W. (2008), Proceedings of 3rd International ESCEC Workshop on Experimental Standard Conditions on Enzyme Characterizations. [html]
  10. Merging of systems biology models with semanticSBML
    Liebermeister W., Krause F., Klipp E. (2008), 5th Workshop on Computation of Biochemical Pathways and Genetic Networks.
  11. SBMLmerge, a system for combining biochemical network models
    Schulz M., Uhlendorf J., Klipp E., Liebermeister W. (2006), Genome Informatics Series 17 (1).