Everything
All Classes
PyQt4.QtGui.QMainWindow.DockOption
PyQt4.QtGui.QMainWindow.DockOptions
PyQt4.QtGui.QPaintDevice.PaintDeviceMetric
PyQt4.QtGui.QWidget.RenderFlag
PyQt4.QtGui.QWidget.RenderFlags
fastSBMLCreator.fastSBMLCreator.FastSBMLCreator
fastSBMLCreator.fastSBMLCreator.SBMLCreationError
libModelSimilarity.bicluster.bicluster.DatabaseAnnotation
libModelSimilarity.bicluster.bicluster.ElementAnnotation
libModelSimilarity.bicluster.bicluster.ModelAnnotation
libModelSimilarity.bicluster.bicluster.SingleAnnotation
libModelSimilarity.calc_bimatrix.AnnotationInformationObject
libModelSimilarity.calc_bimatrix.AnnotationsInModels
libModelSimilarity.calc_bimatrix.CompareAnnotations
libModelSimilarity.calc_bimatrix.DatabaseAnnotation
libModelSimilarity.calc_bimatrix.EuklideanDistance
libModelSimilarity.calc_bimatrix.FakeCompareAnnotations
libModelSimilarity.calc_bimatrix.mycsv
libModelSimilarity.cluster.Cluster
libModelSimilarity.cluster.DatabaseAnnotation
libModelSimilarity.cluster.ElementAnnotation
libModelSimilarity.cluster.ModelAnnotation
libModelSimilarity.cluster.SingleAnnotation
libModelSimilarity.compareModels.ComparableModel
libModelSimilarity.compareModels.CompareModels
libModelSimilarity.eTVSM.eTVSM
libModelSimilarity.fake_annotations.Annotation
libModelSimilarity.fake_annotations.ElementAnnotations
libModelSimilarity.fake_annotations.FakeLibsbmlElement
libModelSimilarity.fake_annotations.ModelElementsAnnotations
libModelSimilarity.html.html
libModelSimilarity.html.htmltable
libModelSimilarity.okapicluster.Cluster
libModelSimilarity.okapicluster.DatabaseAnnotation
libModelSimilarity.okapicluster.ElementAnnotation
libModelSimilarity.okapicluster.ModelAnnotation
libModelSimilarity.okapicluster.SingleAnnotation
libModelSimilarity.qualifiers.Qualifiers
libModelSimilarity.similarity_query.ExtendedMeta_DB
libModelSimilarity.similarity_query.ExtendedRelationObject
libModelSimilarity.wolfscluster.Cluster
libModelSimilarity.wolfscluster.DatabaseAnnotation
libModelSimilarity.wolfscluster.ElementAnnotation
libModelSimilarity.wolfscluster.ModelAnnotation
libModelSimilarity.wolfscluster.SingleAnnotation
libPyless.pyless.model_reduction
libPyless.pyless2.htresults
libPyless.pyless2.model_reduction
libPyless.pylessDerivVar.DerivVar
libPyless.pylessOdeCompare.odeCompare
libPyless.pylessPyscesStoich.MathArrayFunc
libPyless.pylessPyscesStoich.Stoich
libSBAnnotation.annotate.Annotation
libSBAnnotation.annotate.AnnotationCreationError
libSBAnnotation.annotate.AnnotationDatabaseError
libSBAnnotation.annotate.AnnotationError
libSBAnnotation.buildDB.AllysonEdgesRead
libSBAnnotation.buildDB.AllysonNodesRead
libSBAnnotation.buildDB.ChebiRead
libSBAnnotation.buildDB.EntrezGene2GoRead
libSBAnnotation.buildDB.EntrezGene2RefSeqRead
libSBAnnotation.buildDB.EntrezGeneInfoRead
libSBAnnotation.buildDB.EntrezGeneRefseqUniprotRead
libSBAnnotation.buildDB.GeneOntologyRead
libSBAnnotation.buildDB.InterproRead
libSBAnnotation.buildDB.InterproRead.InterproHandler
libSBAnnotation.buildDB.KeggCompoundRead
libSBAnnotation.buildDB.KeggDrugRead
libSBAnnotation.buildDB.KeggEnzymeRead
libSBAnnotation.buildDB.KeggGenomeRead
libSBAnnotation.buildDB.KeggReactionRead
libSBAnnotation.buildDB.KeggRead
libSBAnnotation.buildDB.KeggTaxonomyRead
libSBAnnotation.buildDB.KeggTaxonomyTreeRead
libSBAnnotation.buildDB.NcbiTaxonomyNamesRead
libSBAnnotation.buildDB.NcbiTaxonomyNodesRead
libSBAnnotation.buildDB.OboRead
libSBAnnotation.buildDB.PubchemCompound2SubstanceRead
libSBAnnotation.buildDB.PubchemCompoundParentRead
libSBAnnotation.buildDB.PubchemCompoundRead
libSBAnnotation.buildDB.PubchemRead
libSBAnnotation.buildDB.ReactomeRead
libSBAnnotation.buildDB.Read
libSBAnnotation.buildDB.SGDCrossRefRead
libSBAnnotation.buildDB.SboRead
libSBAnnotation.buildDB.SdfRead
libSBAnnotation.buildDB.TabLineRead
libSBAnnotation.buildDB.UniprotRead
libSBAnnotation.config.Config
libSBAnnotation.database.AnnotationObject
libSBAnnotation.database.Database
libSBAnnotation.database.InconsistentDatabaseError
libSBAnnotation.database.RelationObject
libSBAnnotation.database_new.ContentTooShortError
libSBAnnotation.database_new.DatabaseError
libSBAnnotation.database_new.Meta_DB
libSBAnnotation.database_new.Meta_DB.Local
libSBAnnotation.file.CustomFile
libSBAnnotation.indexedTables.AbstractItem
libSBAnnotation.indexedTables.AbstractItemRelation
libSBAnnotation.indexedTables.BasicTable
libSBAnnotation.indexedTables.ColumnNotFoundException
libSBAnnotation.indexedTables.ExternalItem
libSBAnnotation.indexedTables.Localisation
libSBAnnotation.indexedTables.StringRepr
libSBAnnotation.indexedTables.StringReprFromDatabase
libSBAnnotation.indexedTables.TakesPart
libSBAnnotation.mydifflib.StringMatcher
libSBAnnotation.sbannotationSOAPserver.SBannoationServer
libSBAnnotation.sbo.ModelSbo
libSBAnnotation.sbo.SboDatabase
libSBAnnotation.sbo.SboElement
libSBAnnotation.tables.AbstractItem
libSBAnnotation.tables.AbstractItemRelation
libSBAnnotation.tables.BasicTable
libSBAnnotation.tables.ColumnNotFoundException
libSBAnnotation.tables.ExternalItem
libSBAnnotation.tables.Localisation
libSBAnnotation.tables.StringRepr
libSBAnnotation.tables.StringReprFromDatabase
libSBAnnotation.tables.TakesPart
libSBAnnotation.xmlobject.CannotSave
libSBAnnotation.xmlobject.InvalidNode
libSBAnnotation.xmlobject.InvalidXML
libSBAnnotation.xmlobject.MissingRootTag
libSBAnnotation.xmlobject.XMLFile
libSBAnnotation.xmlobject.XMLNode
libSBtab.Column.Column
libSBtab.Column.ColumnProxy
libSBtab.Document.Document
libSBtab.Exception.GeneralColumnError
libSBtab.Exception.GeneralError
libSBtab.Exception.NicknameAlreadyTakenError
libSBtab.Exception.NoDocumentError
libSBtab.Exception.NoSuchTableError
libSBtab.Exception.NoValueGivenError
libSBtab.Exception.RowError
libSBtab.Exception.SemanticError
libSBtab.Exception.SimpleError
libSBtab.Exception.SyntacticError
libSBtab.Exception.ValidationError
libSBtab.Exception.ValueNotKnownError
libSBtab.GenerateSBtab.GenerateSBtab
libSBtab.GenerateSBtab.Options
libSBtab.Helper.RowContainer
libSBtab.Row.Column
libSBtab.Row.Compartment
libSBtab.Row.Compound
libSBtab.Row.Data
libSBtab.Row.Entity
libSBtab.Row.Enzyme
libSBtab.Row.ExpressionData
libSBtab.Row.Gene
libSBtab.Row.GraphicsInformation
libSBtab.Row.Info
libSBtab.Row.KineticData
libSBtab.Row.MetaInformation
libSBtab.Row.MetaboliteData
libSBtab.Row.Names
libSBtab.Row.ProteinData
libSBtab.Row.Quantity
libSBtab.Row.QuantityData
libSBtab.Row.Reaction
libSBtab.Row.Regulator
libSBtab.Row.Resource
libSBtab.Row.Row
libSBtab.Table.ColumnTable
libSBtab.Table.CompartmentTable
libSBtab.Table.CompoundTable
libSBtab.Table.EntityTable
libSBtab.Table.EnzymeTable
libSBtab.Table.GeneTable
libSBtab.Table.GraphicsInformationTable
libSBtab.Table.IdentifierTable
libSBtab.Table.KineticDataTable
libSBtab.Table.MetaboliteDataTable
libSBtab.Table.QuantityTable
libSBtab.Table.ReactionTable
libSBtab.Table.RegulatorTable
libSBtab.Table.Table
libSBtab.Validator.Constraint
libSBtab.Validator.Known
libSBtab.Validator.Required
libSBtab.Value.ID
libSBtab.Value.ReactionFormula
libSBtab.Value.ReactionFormula.Reactant
libSBtab.Value.ReactionID
libSBtab.Value.Value
libSBtab.Warning.BoolParserWarning
libSBtab.Warning.ColumnParserWarning
libSBtab.Warning.ColumnWarning
libSBtab.Warning.DatabaseParserWarning
libSBtab.Warning.FileWarning
libSBtab.Warning.FirstLineWarning
libSBtab.Warning.GeneralWarning
libSBtab.Warning.NicknameParserWarning
libSBtab.Warning.NoDefaultTableWarning
libSBtab.Warning.NoSuchColumnWarning
libSBtab.Warning.ParserWarning
libSBtab.Warning.SimpleWarning
libSBtab.Warning.StringParserWarning
libSBtab.Warning.TableNameAlreadyGivenWarning
libSBtab.Warning.TableNotActivatedWarning
libSBtab.convert.Convert2SBML
libSBtab.convert.Convert2SBTab
libTI2.aa.laotide_fit
libTI2.add_new_kinetics.adder
libTI2.add_sboterms_to_sbml.add_sboterms
libTI2.global_options.global_options
libTI2.laotide.laosweep
libTI2.laotide.laotide
libTI2.laotide.laotide_fit
libTI2.laotide.laotide_model
libTI2.laotide.timing_test
libTI2.model.additional_information_handler.additional_information_handler
libTI2.model.flat_formula_database_parser.flat_formula_database_parser
libTI2.model.flat_formula_database_parser.formula_definition
libTI2.model.flat_formula_database_parser.link
libTI2.model.model.Model
libTI2.model.pre_defined_formulas.pre_defined_formula
libTI2.model.pre_defined_formulas.pre_defined_formulas
libTI2.model.rre_generator.parameter_identifier
libTI2.model.rre_generator.precision
libTI2.model.rre_generator.rre_generator
libTI2.model.sboreader.children_linker
libTI2.model.sboreader.mathmlparser
libTI2.model.sboreader.sboelement
libTI2.model.sboreader.sboreader
libTI2.model.sboreader.sbotree
libTI2.optimize.nnca.dataloader
libTI2.optimize.nnca.tf_function
libTI2.optimize.nnca.tf_system
libTI2.results.consolewriter.consolewriter
libTI2.results.simulation_data_handler.root_results
libTI2.results.simulation_data_handler.simulation_data
libTI2.results.simulation_data_handler.simulation_data_handler
libTI2.solvers.abstract_fortran_solver.SimulationError
libTI2.solvers.abstract_fortran_solver.abstract_fortran_solver
libTI2.solvers.abstract_fortran_solver.abstract_fortran_titrator
libTI2.solvers.bestfortransolver.bestfortransolver
libTI2.solvers.copasisolver.copasiestimator
libTI2.solvers.copasisolver.copasisolver
libTI2.solvers.copasisolver.copasititrator
libTI2.solvers.copasisolver.cpsfile
libTI2.solvers.copasisolver.fake_time_course_grabber
libTI2.solvers.copasisolver.time_course_grabber
libTI2.solvers.csolver.csolver
libTI2.solvers.dopri5solver.dopri5solver
libTI2.solvers.dopri5solver.dopri5titrator
libTI2.solvers.eulsimsolver.eulsimsolver
libTI2.solvers.eulsimsolver.eulsimtitrator
libTI2.solvers.limexsolver.limexsolver
libTI2.solvers.limexsolver.limextitrator
libTI2.solvers.lsodasolver.lsodasolver
libTI2.solvers.lsodasolver.lsodatitrator
libTI2.solvers.lsodesolver.lsodesolver
libTI2.solvers.lsodesolver.lsodetitrator
libTI2.solvers.radausolver.radausolver
libTI2.solvers.radausolver.radautitrator
libTI2.solvers.seulexsolver.seulexsolver
libTI2.solvers.seulexsolver.seulextitrator
libTI2.solvers.solver.solver
semanticSBML.Model.LibSbmlError
semanticSBML.Model.Model
semanticSBML.Model.NeedFilenameError
semanticSBML.annotate.Annotator
semanticSBML.annotate.ElementAnnotations
semanticSBML.annotate.ModelElementsAnnotations
semanticSBML.balance.Parameter_balancing
semanticSBML.kegg2sbml.KEGG2sbmlError
semanticSBML.kegg2sbml.kegg
semanticSBML.kegg2sbml.kegg2sbml
semanticSBML.kegg2sbml.kegg2sbml_parser
semanticSBML.kineticizer.kineticizer
semanticSBML.kineticizer.kineticizer_cs
semanticSBML.kineticizer.kineticizer_ds
semanticSBML.kineticizer.kineticizer_fd
semanticSBML.kineticizer.kineticizer_ms
semanticSBML.kineticizer.kineticizer_rp
semanticSBML.merge.MergeTuple
semanticSBML.merge.MergeTupleError
semanticSBML.merge.MergedElement
semanticSBML.merge.Merger
semanticSBML.merge_datamodel.MergeBase
semanticSBML.merge_datamodel.MergeBioQuantityLocationError
semanticSBML.merge_datamodel.MergeError
semanticSBML.merge_datamodel.MergedModel
semanticSBML.merge_datamodel.OriginElement
semanticSBML.merge_datamodel.OriginModel
semanticSBML.merge_datamodel.SubBioentity
semanticSBML.merge_datamodel.SubBioquantity
semanticSBML.merge_datamodel.SubBioquantityCompartment
semanticSBML.merge_datamodel.SubBioquantityParameter
semanticSBML.merge_datamodel.SubBioquantityReaction
semanticSBML.merge_datamodel.SubBioquantitySpecies
semanticSBML.merge_datamodel.SubModelstatement
semanticSBML.merge_datamodel.SubModelstatementCompartment
semanticSBML.merge_datamodel.SubModelstatementParameter
semanticSBML.merge_datamodel.SubModelstatementReaction
semanticSBML.merge_datamodel.SubModelstatementSpecies
semanticSBML.merge_datamodel.Unit
semanticSBML.merge_datamodel.UnitDef
semanticSBML.merge_logic.BioRelations
semanticSBML.merge_logic.BioRelations.Local
semanticSBML.sbmlcheck.CheckResult
semanticSBML.sbmlcheck.Checker
semanticSBML.xmlobject.CannotSave
semanticSBML.xmlobject.InvalidNode
semanticSBML.xmlobject.InvalidXML
semanticSBML.xmlobject.MissingRootTag
semanticSBML.xmlobject.XMLFile
semanticSBML.xmlobject.XMLNode
semanticSBMLgui.gui_main_ui.Ui_MainWindow
semanticSBMLgui.gui_view_annotate.Annotation_view
semanticSBMLgui.gui_view_balance.Balance_view
semanticSBMLgui.gui_view_build.Id2Sbml_view
semanticSBMLgui.gui_view_check.Check_view
semanticSBMLgui.gui_view_graph.GraphSVG_view
semanticSBMLgui.gui_view_graph.SemanticSbmlGui_view
semanticSBMLgui.gui_view_merge.Merge_Element_view
semanticSBMLgui.gui_view_merge.Merge_view
semanticSBMLgui.gui_view_merge.Merged_Element_view
semanticSBMLgui.gui_view_merge.Tuple_widget
semanticSBMLgui.gui_view_semanticSBML.SemanticSbmlGui_view
semanticSBMLui.CustomInteractiveConsole.CustomConsole
semanticSBMLui.CustomInteractiveConsole.Singleton_datastore
semanticSBMLui.CustomInteractiveConsole.Singleton_datastore.Local
semanticSBMLui.console_views.Annotation_view
semanticSBMLui.console_views.Check_view
semanticSBMLui.console_views.Console_view
semanticSBMLui.console_views.Id2Sbml_view
semanticSBMLui.console_views.Merge_view
semanticSBMLui.console_views.StAn_Callback
semanticSBMLui.docmanager.DocManagerError
semanticSBMLui.docmanager.DocumentsRemainingError
semanticSBMLui.docmanager.NoSuchDocumentError
semanticSBMLui.docmanager.SemanticSbmlGui_doc
semanticSBMLui.docmanager.SemanticSbmlGui_docmgr
All Functions
fastSBMLCreator.fastSBMLCreator.create_model_ec
fastSBMLCreator.fastSBMLCreator.create_model_plt
fastSBMLCreator.fastSBMLCreator.create_model_pmn
fastSBMLCreator.fastSBMLCreator.is_float
libModelSimilarity.bicluster.interpret_bicluster.akdes_files
libModelSimilarity.bicluster.interpret_bicluster.anno2name
libModelSimilarity.bicluster.interpret_bicluster.hcc_tex
libModelSimilarity.bicluster.interpret_bicluster.printable
libModelSimilarity.bicluster.interpret_bicluster.pure_bicluster
libModelSimilarity.bicluster.interpret_nnmf.filename_to_list
libModelSimilarity.compareModels.main
libModelSimilarity.eTVSM.main
libModelSimilarity.html.shorten_names_and_numbers
libModelSimilarity.stats.count_degree_of_annotation
libModelSimilarity.stats.count_qualifiers
libModelSimilarity.stats.count_resources
libPyless.pyless.__super_matrix__
libPyless.pyless.aorga
libPyless.pyless.delta_replace
libPyless.pyless.deorthogonalize
libPyless.pyless.lanczos
libPyless.pyless.lup
libPyless.pyless.matrix_lanczos
libPyless.pyless.qrpt
libPyless.pyless.sylvester
libPyless.pyless.tempfilewrite
libPyless.pyless.variable_replace
libPyless.pyless.zero_mat
libPyless.pyless2.delta_replace
libPyless.pyless2.tempfilewrite
libPyless.pyless2.variable_replace
libPyless.pyless2.zero_mat
libPyless.pylessDerivVar.isDerivVar
libSBAnnotation.annotate.checkAndGetXml
libSBAnnotation.annotate.get_db_from_uri
libSBAnnotation.annotate.redownload
libSBAnnotation.buildDB.readLocal
libSBAnnotation.stderr.downloadProgress
libSBAnnotation.stderr.info
libSBAnnotation.stderr.status_fkt
libSBAnnotation.stderr.yes_or_no
libSBAnnotation.stderr.yes_or_no_fkt
libSBtab.Column.Action
libSBtab.Column.AlternateURIs
libSBtab.Column.BuildElement
libSBtab.Column.Charge
libSBtab.Column.ColumnName
libSBtab.Column.Compartment
libSBtab.Column.CompartmentID_DB
libSBtab.Column.CompartmentName
libSBtab.Column.CompartmentSBMLid
libSBtab.Column.Compound
libSBtab.Column.CompoundID_KEGG_Compound
libSBtab.Column.CompoundName
libSBtab.Column.CompoundSBMLid
libSBtab.Column.DBName
libSBtab.Column.DataType
libSBtab.Column.Description
libSBtab.Column.Elements
libSBtab.Column.Enzyme
libSBtab.Column.EnzymeID_EC
libSBtab.Column.EnzymeName
libSBtab.Column.EnzymeRegulationBoolean
libSBtab.Column.EnzymeRegulators
libSBtab.Column.EnzymeSBMLid
libSBtab.Column.Gene
libSBtab.Column.GeneID_DB
libSBtab.Column.GeneName
libSBtab.Column.ID
libSBtab.Column.IDInputHelper
libSBtab.Column.IDPattern
libSBtab.Column.IsConstant
libSBtab.Column.Location
libSBtab.Column.Mass
libSBtab.Column.MathDescriptor
libSBtab.Column.MathTransformation
libSBtab.Column.Mean
libSBtab.Column.Name
libSBtab.Column.Nickname
libSBtab.Column.OrganismID_DB
libSBtab.Column.OrganismName
libSBtab.Column.OuterCompartment
libSBtab.Column.Position
libSBtab.Column.Print
libSBtab.Column.Quantity
libSBtab.Column.QuantityType
libSBtab.Column.Reaction
libSBtab.Column.ReactionFormula
libSBtab.Column.ReactionID
libSBtab.Column.ReactionID_KEGG_Reaction
libSBtab.Column.ReactionName
libSBtab.Column.ReactionSBMLid
libSBtab.Column.ReferenceID
libSBtab.Column.ReferenceName
libSBtab.Column.SBMLid
libSBtab.Column.SimpleString
libSBtab.Column.Size
libSBtab.Column.Split
libSBtab.Column.Std
libSBtab.Column.Temperature
libSBtab.Column.Time
libSBtab.Column.TranscriptionalRegulation
libSBtab.Column.TranslationalRegulation
libSBtab.Column.URI
libSBtab.Column.URN
libSBtab.Column.Unit
libSBtab.Column.Value
libSBtab.Column.pH
libSBtab.Document.canonical_table_name
libSBtab.Helper.filename
libSBtab.Helper.flatten
libSBtab.Helper.row_uniq
libSBtab.Helper.split_column_name_and_default_value
libSBtab.Helper.split_column_name_and_unit
libSBtab.Helper.split_database_and_id
libSBtab.Helper.split_in_two_at
libSBtab.Helper.split_qualifier_and_id
libSBtab.Helper.uniq
libSBtab.IDMerge.compareElements
libSBtab.IDMerge.getScoreMatrix
libSBtab.IDMerge.isAnnotationEqual
libSBtab.Parser.parse_bool
libSBtab.Parser.parse_column
libSBtab.Parser.parse_database
libSBtab.Parser.parse_datatype
libSBtab.Parser.parse_full_id
libSBtab.Parser.parse_id
libSBtab.Parser.parse_integer
libSBtab.Parser.parse_kinetic_formula
libSBtab.Parser.parse_nickname
libSBtab.Parser.parse_numerical
libSBtab.Parser.parse_position
libSBtab.Parser.parse_reaction_formula
libSBtab.Parser.parse_reaction_id
libSBtab.Parser.parse_string
libSBtab.Parser.parse_string_with_nan
libSBtab.Parser.parse_unit
libSBtab.Table.enzyme_regulation
libSBtab.Table.eval_sort
libSBtab.Validator.must_be_known
libSBtab.Validator.not_empty
libSBtab.Value.formatID
libSBtab.Value.multigcd
libSBtab.Warning.showwarning
libSBtab.Warning.warn
libSBtab.Warning.warning_message
libTI2.aa.brute_min
libTI2.aa.find_reactions_with_identical_substrates
libTI2.aa.gen_range
libTI2.aa.superset
libTI2.laotide.analyse_synergism_quotient
libTI2.laotide.fast_fortran_2dtide
libTI2.laotide.fast_fortran_2dtide1
libTI2.laotide.fast_fortran_2dtide2
libTI2.laotide.fast_fortran_tide
libTI2.laotide.get_combined_formula
libTI2.laotide.get_inhibition_formula
libTI2.laotide.gram_schmidt_single
libTI2.laotide.inner_product
libTI2.laotide.linescan
libTI2.laotide.linesearch
libTI2.laotide.mtoi
libTI2.laotide.orthogonal
libTI2.laotide.orthogonal_to_list
libTI2.laotide.orthoptimize
libTI2.laotide.orthoptimize_single
libTI2.laotide.test_for_inhibitor_strength
libTI2.model.function_manipulation.clean_up_formula
libTI2.model.function_manipulation.compare_clean_formulas
libTI2.model.function_manipulation.evaluate_clean_formula
libTI2.model.function_manipulation.evaluate_general_formula
libTI2.model.function_manipulation.include_spaces_in_formula
libTI2.model.function_manipulation.safe_replace_in_formula
libTI2.model.function_manipulation.scipy2mathml
libTI2.model.function_manipulation.string2float
libTI2.model.function_manipulation.string_contains_spacechar
libTI2.model.rre_generator.copy_from_to
libTI2.model.sboreader.SBO2num
libTI2.optimize.nnca.fmin_brute
libTI2.optimize.nnca.fmin_differential_evolution
libTI2.optimize.nnca.fmin_gen
libTI2.optimize.nnca.load_tfs
libTI2.optimize.nnca.main
libTI2.optimize.nnca.make_spaces_in_formula
libTI2.optimize.nnca.save_tfs
libTI2.results.consolewriter.__formattag__
libTI2.results.consolewriter.__styletags__
libTI2.results.simulation_data_handler.drop_sdh
libTI2.results.simulation_data_handler.load_sdh
libTI2.solvers.abstract_fortran_solver.abstract_test
libTI2.solvers.abstract_fortran_solver.cut_long_lines
libTI2.solvers.abstract_fortran_solver.deviation_code
libTI2.solvers.abstract_fortran_solver.float2fortran_string
libTI2.solvers.abstract_fortran_solver.formula2fortran
libTI2.solvers.abstract_fortran_solver.get_random_name
libTI2.solvers.abstract_fortran_solver.mathml2fortran
libTI2.solvers.abstract_fortran_solver.safefloat
libTI2.solvers.abstract_fortran_solver.scipy2fortran
libTI2.solvers.abstract_fortran_solver.test_all
libTI2.solvers.abstract_fortran_solver.test_all_solve
libTI2.solvers.copasisolver.__linescore__
libTI2.solvers.copasisolver.get_random_name
libTI2.solvers.copasisolver.pretty_xml
libTI2.solvers.copasisolver.scipy2copasi
libTI2.solvers.solver.odeint
semanticSBML.kegg2sbml.get_reaction_id_by_substrates
semanticSBML.merge_logic.resetScoreMatrix
semanticSBML.sbml2dot.get_cluster_for_nodes
semanticSBML.sbml2dot.get_compartments_for_nodes
semanticSBML.sbml2dot.overwrite_colors
semanticSBML.sbml2dot.sbml2svg
semanticSBML.sbml2dot.write_legend
semanticSBML.sbml2dot.write_rules_and_alternatives
semanticSBML.sbml2dot.write_to_dotfile
semanticSBML.sbml2dot.write_to_stream
semanticSBML.sbmlmisc.get_annotation_for_id
semanticSBML.sbmlmisc.get_element_by_annotation
semanticSBML.sbmlmisc.get_element_by_id
semanticSBML.sbmlmisc.get_elementtype2database
semanticSBML.sbmlmisc.get_enzyme_for_reaction
semanticSBML.sbmlmisc.get_participants
semanticSBML.sbmlmisc.has_celld_annotations
semanticSBML.sbmlmisc.is_enzyme
semanticSBML.sbmlmisc.make_meta_ids
semanticSBML.sbmlmisc.make_valid_xml_id
semanticSBML.sbmlmisc.parse_reaction_scheme
semanticSBML.sbmlmisc.reassign_annotations
semanticSBML.sbmlmisc.remove_all_celld_annotations
semanticSBML.sbmlmisc.setintersection
semanticSBML.sbmlmisc.unify_reaction_scheme_delimiter
semanticSBMLgui.semanticSBML_gui_resource_rc.qCleanupResources
semanticSBMLgui.semanticSBML_gui_resource_rc.qInitResources
All Variables
fastSBMLCreator.__package__
fastSBMLCreator.fastSBMLCreator.__package__
fastSBMLCreator.fastSBMLCreator.__warningregistry__
fastSBMLCreator.fastSBMLCreator.insert_annotations
libModelSimilarity.__package__
libModelSimilarity.bicluster.__package__
libModelSimilarity.bicluster.bicluster.apply_caching
libModelSimilarity.bicluster.bicluster.da
libModelSimilarity.bicluster.bicluster.database_new_instance
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