Class Id2Sbml_view

source code

contoll and view for the creation of SBML files from a list of KEGG reaction identifiers

Instance Methods

[hide private]

__init__(self)
initialize the database

source code

run(self)

source code

makeInitMenu(self)
create menu with ...

source code

exit(self)
do nothing

source code

slotNext_l(self, *idlist)
join args (idlist) and filter all KEGG rection IDs make mext menu slotNext()

source code

slotNext_f(self, *fileNames)
traverse list of fileNames and check if files are existing if the exist parse all KEGG reaction IDs make next menu slotNext()

source code

slotNext(self)
make a list of all reaction (2 rows per reaction )

source code

listCompartments(self)
list all avialable compartments

source code

chooseCompartment(self, rid=None, cid=None)
choose a new compartemt for a reaction id and redisplay reactions

source code

slotKegg2Sbml(self)
try to create an sbml file catch errors: not internet connection, output file has no xml extension for output file, wrong input, output file already exists

source code

Method Details

[hide private]

makeInitMenu(self)

source code


create menu with 
- input box:
        - file input
        - text box manual input
- output box:
        - choose folder button
        - filename text field
- next button (slotNext())

slotNext(self)

source code

make a list of all reaction (2 rows per reaction )

first row: reaction ids and reaction in word:s
second row: selected compartment for rection