Package semanticSBML :: Module merge_logic

Module merge_logic

Classes

BioRelations
singleton class for the comparison of elements creation of globally unique identifiers update of mathematical expressions that contain identifiers

Functions

[hide private]

resetScoreMatrix(filename)
create an empty score matrix the score matrix should be filled to contain values that represent the relationship between MIRIAM annotations with different or same qualifier the score matrix is in human readable format

source code

Variables

[hide private]

g_bio_qualifier_list = [u'is', u'hasPart', u'hasProperty', u'i...

g_known_units = [u'ampere', u'gram', u'katal', u'metre', u'sec...

bq = [<XMLNode: BioQualifier>]

__package__ = 'semanticSBML'

q = <XMLNode: qualifier>

Imports: re, copy, xmlobject, os, libsbml, merge_datamodel, libSBAnnotation, sys

Variables Details

[hide private]

g_bio_qualifier_list

Value:

[u'is',
 u'hasPart',
 u'hasProperty',
 u'isPartOf',
 u'isPropertyOf',
 u'isVersionOf',
 u'hasVersion',
 u'isHomologTo',
...

g_known_units

Value:

[u'ampere',
 u'gram',
 u'katal',
 u'metre',
 u'second',
 u'watt',
 u'becquerel',
 u'gray',
...