Package semanticSBML :: Module merge_datamodel :: Class OriginElement

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Class OriginElement

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abstraction of a biological entity for merging

wrap class that consists of three sublcass of the base type

SubBioentity
SubBioquantity
SubModelstatement

Instance Methods

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__init__(self, libsbml_element, merge_model)

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__getattr__(self, n)
realize wrap pattern! make methods of the sub objects

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getDepends_onElements(self)

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getDependingElements(self)

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connect_view_functions(self, tuple_changed_fkt)
set an external function that should be executed when the tuple this element belongs to is changed

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addTupleCandidate(self, element, force=False)
add and element to the list of similar elements

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addTupleCandidates(self, elements)
update the list of similar elements

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[OriginElement]

getTupleCanidates(self)
returns a list of similar elements, elements that have matching MIRIAM annotations

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MergeTuple or None

getTuple(self)
returns the MergeTuple the element instance belongs to, if it does not belong to an element None is returnend

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setTuple(self, tuple)
set the MergeTuple the element belongs to if an external function of a view is set, call the function so the view can be updated

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setId(self, id)
set the "new" id, this identifier is globally unique in the merged model

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getId(self)

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Method Details

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init(self, libsbml_element, merge_model)
(Constructor)

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Overrides: MergeBase.__init__

getattr(self, n)
(Qualification operator)

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realize wrap pattern! make methods of the sub objects

SubBioquantity
SubBioentity
SubModelstatement

directly accessible

connect_view_functions(self, tuple_changed_fkt)

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set an external function that should be executed when the tuple this element belongs to is changed

Parameters:

tuple_changed_fkt (function pointer)

addTupleCandidate(self, element, force=False)

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add and element to the list of similar elements

Parameters:

element (OriginElement)

addTupleCandidates(self, elements)

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update the list of similar elements

Parameters:

elements ([OriginElement])

setTuple(self, tuple)

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set the MergeTuple the element belongs to if an external function of a view is set, call the function so the view can be updated

Parameters:

tuple (MergeTuple)

setId(self, id)

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set the "new" id, this identifier is globally unique in the merged model

Parameters:

id (str)

Class OriginElement

__init__(self, libsbml_element, merge_model) (Constructor)

__getattr__(self, n) (Qualification operator)

connect_view_functions(self, tuple_changed_fkt)

addTupleCandidate(self, element, force=False)

addTupleCandidates(self, elements)

setTuple(self, tuple)

setId(self, id)

init(self, libsbml_element, merge_model)
(Constructor)

getattr(self, n)
(Qualification operator)