semanticSBML.merge.MergeTuple

Class MergeTuple

collection of matching biological entites (OriginElements) link to a merged entity (MergedElement) functions for adding and removing biological entites

Instance Methods

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__init__(self, el1, el2)
The tuple is initialized with two elements

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connect_view_functions(self, external_fkt)
connect external view function so it can update if the Merged Element was created

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MergedElement

setMergedElement(self, merged_model, prepare=True, models=None)
create MergedElement, this function can be used for the initial createn and the updating it will send a signal that the element was created/refreshed

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[OriginElement]

getElements(self)
return all MergedElements of this tuple

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l{OriginElement} or None

getElement(self, model)
get an element that belongs to a specific model

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MergedElement

getMergedElement(self)
get the merged element of this tuple, this can fail if setMergedElement was not called before

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addElement(self, old_element, new_element, force=False)

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remElement(self, element, force=False)
remove element form tuple and add remaining elements as candidates

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setMergedElement(self, merged_model, prepare=True, models=None)

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create MergedElement, this function can be used for the initial createn and the updating it will send a signal that the element was created/refreshed

Parameters:

prepare (bool) - prepare the merged element, fill choice objects
model ([OriginModel])

Returns: MergedElement

getElement(self, model)

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get an element that belongs to a specific model

Parameters:

model (OriginModel)

Returns: l{OriginElement} or None

addElement(self, old_element, new_element, force=False)

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Parameters:

force (bool) - adding of element is requred (eg user interaction)
old_element (OriginElement) - supposedly old element (this name is not needed anymore)
new_element (OriginElement)

remElement(self, element, force=False)

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remove element form tuple and add remaining elements as candidates

Parameters:

force - force removal but do not destroy tuple
direct - user requested removal, update candidate list