Module annotate

{u'http://arrayexpress.org/': u'ArrayExpress',
 u'http://arxiv.org/': u'arXiv',
 u'http://biomodels.net/MIRIAM/': u'MIRIAM Resources',
 u'http://biomodels.net/SBO/': u'Systems Biology Ontology',
 u'http://mousegenome.org/': u'Mouse Genome Database',
 u'http://pfam.org/': u'Pfam',
 u'http://pir.georgetown.edu/pirsf/': u'PIRSF',
 u'http://sabio.villa-bosch.de/reaction/': u'SABIO-RK Reaction',
...

{u'3DMET': u'urn:miriam:3dmet',
 u'Aclame': u'urn:miriam:aclame',
 u'Anatomical Therapeutic Chemical': u'urn:miriam:atc',
 u'ArrayExpress': u'urn:miriam:arrayexpress',
 u'BIND': u'urn:miriam:bind',
 u'BRENDA': u'urn:miriam:brenda',
 u'BioGRID': u'urn:miriam:biogrid',
 u'BioModels': u'urn:miriam:biomodels.db',
...

{u'3DMET': [u'species', u'parameter'],
 u'Aclame': [u'species'],
 u'Anatomical Therapeutic Chemical': [u'species'],
 u'BIND': [u'species',
           'rateRule',
           'assignmentRule',
           'algebraicRule',
           u'reaction',
...

{u'algebraicRule': set([u'BIND',
                        u'Enzyme Nomenclature',
                        u'Gene Ontology',
                        u'IntAct',
                        u'KEGG Pathway',
                        u'KEGG Reaction',
                        u'Reactome',
                        u'Systems Biology Ontology']),
...

{u'3DMET': [],
 u'Aclame': [],
 u'Anatomical Therapeutic Chemical': [],
 u'ArrayExpress': [u'http://arrayexpress.org/'],
 u'BIND': [u'http://www.bind.ca/'],
 u'BRENDA': [],
 u'BioGRID': [],
 u'BioModels': [],
...

{u'3DMET': u'^B\d{5}$',
 u'Aclame': u'^mge:\d+$',
 u'Anatomical Therapeutic Chemical': u'^(\w+(\-\w+)?(\.\w+)?/)?\d{4,7}
(\.\d{4}(v\d+)?)?$',
 u'ArrayExpress': u'^[AEP]-\w{4}-\d+$',
 u'BIND': u'^\d+$',
 u'BRENDA': u'^((\d+\.-\.-\.-)|(\d+\.\d+\.-\.-)|(\d+\.\d+\.\d+\.-)|(\d
+\.\d+\.\d+\.\d+))$',
...

{u'3DMET': 'http://www.3dmet.dna.affrc.go.jp/html/%s.html',
 u'Aclame': 'http://aclame.ulb.ac.be/perl/Aclame/Genomes/mge_view.cgi?
view=info&id=%s',
 u'Anatomical Therapeutic Chemical': 'http://www.whocc.no/atc_ddd_inde
x/?code=%s',
 u'ArrayExpress': 'http://www.ebi.ac.uk/arrayexpress/experiments/%s',
 u'BIND': 'http://www.bind.ca/Action?identifier=bindid&idsearch=%s',
 u'BRENDA': 'http://www.brenda-enzymes.org/php/result_flat.php4?ecno=%
...

{0: u'is',
 1: u'hasPart',
 2: u'isPartOf',
 3: u'isVersionOf',
 4: u'hasVersion',
 5: u'isHomologTo',
 6: u'isDescribedBy',
 7: u'isEncodedBy',
...

{0: u'is', 1: u'isDescribedBy', 2: u'unknown'}

{u'encodes': 8,
 u'hasPart': 1,
 u'hasVersion': 4,
 u'is': 0,
 u'isDescribedBy': 6,
 u'isEncodedBy': 7,
 u'isHomologTo': 5,
 u'isPartOf': 2,
...

{u'is': 0, u'isDescribedBy': 1, u'unknown': 2}

{u'is': u'The modelling object represented by the model component is t
he subject of the referenced resource. For instance, this qualifier mi
ght be used to link the encoded model to a database of models.',
 u'isDerivedFrom': u'The modelling object represented by the component
 of the encoded model is derived from the modelling object represented
 by the referenced resource. For instance, they can be the fruit of a 
refinement or their adaptation for usage in a different context.',
 u'isDescribedBy': u'The modelling object represented by the component
...

{u'encodes': u'The biological entity represented by the model componen
t encodes, directly or by transitivity the subject of the referenced r
esource.',
 u'hasPart': u'The biological entity represented by the model componen
t includes the subject of the referenced resource, either physically o
r logically. This relation might be used to link a complex to the desc
ription of its components.',
 u'hasProperty': u'The subject of the referenced resource is a propert
...

[u'is',
 u'hasPart',
 u'hasProperty',
 u'isPartOf',
 u'isPropertyOf',
 u'isVersionOf',
 u'hasVersion',
 u'isHomologTo',
...

[u'is', u'isDerivedFrom', u'isDescribedBy', u'unknown']

'%e<br>Old %s needs update!<br> Trying to get it ...' %(e, libSBAnnota
tion.config.Config().getpath('resources', 'libsbml_resources'))