Module laotide

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Classes

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laotide_model

laotide

laotide_fit

laosweep

timing_test

Functions

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mtoi(func, x0)

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linesearch(func, x, min_direc)

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linescan(f, x0, direction_index)

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test_for_inhibitor_strength(f, inhibitor_names, shiftlist, modelname, level, f_zero)

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fast_fortran_tide(f, inhibitor_names, aim_goal, modelname)

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fast_fortran_2dtide(f, inhibitor_names)

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analyse_synergism_quotient(sq)

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fast_fortran_2dtide2(f, inhibitor_names)

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fast_fortran_2dtide1(f, inhibitor_names)

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inner_product(x, y)

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orthogonal(x, y)

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orthogonal_to_list(x, l)

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gram_schmidt_single(x, l)

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orthoptimize(func, x0)

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orthoptimize_single(func, x0, dead_direction_list=[]) source code

get_inhibition_formula(inhibition_type, model_instance, reaction_id)

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get_combined_formula(model_instance, reaction_id, original_equation)

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Variables

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small_val = 1e-06

max_line_steps = 1000

starting_line_step = 1.0

abs_error = 1e-08

__package__ = 'libTI2'

Imports: copy, math, sys, os, scipy, global_options, solvers, model