Package libModelSimilarity :: Module calc_bimatrix

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Module calc_bimatrix

Classes

mycsv

AnnotationInformationObject

AnnotationsInModels

CompareAnnotations

FakeCompareAnnotations

EuklideanDistance

DatabaseAnnotation

Variables

database_new_instance = None

add_qsms = False

use_qsms = False

result_number = 3

bimatrix_filename = '/home/stillsen/.semanticSBML/bimatrix.csv'

simmatrix_filename = '/home/stillsen/.semanticSBML/simmatrix.csv'

use_libSBAnnotation = True

use_similarity_in_euklidian = True

use_semantic_density = False

annotation_count = {}

__package__ = 'libModelSimilarity'

Imports: sys, os, semanticSBML, libsbml, libSBAnnotation, cluster, fake_annotations, scipy