[ Identifiers | Bugs ]

Identifier Index

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A

aa (in libTI2)	addAnnotationLink() (in Annotator)	AlternateURIs() (in libSBtab.Column)
about_text (in semanticSBMLui.ui_resources)	addAnnotationLink() (in SemanticSbmlGui_doc)	analyse_synergism_quotient() (in libTI2.laotide)
abs_error (in libTI2.laotide)	addAnnotationLinkAutomatic() (in Model)	analyseABCD() (in model_reduction)
abstract_fortran_solver (in libTI2.solvers)	addAnnotationLinkAutomatic() (in Annotator)	AnalyseK() (in Stoich)
abstract_fortran_solver (in libTI2.solvers.abstract_fortran_solver)	addColumnsMapping() (in Table)	AnalyseL() (in Stoich)
abstract_fortran_titrator (in libTI2.solvers.abstract_fortran_solver)	addDocument() (in SemanticSbmlGui_docmgr)	anno2name() (in libModelSimilarity.bicluster.interpret_bicluster)
abstract_id_to_single_annotation() (in CompareAnnotations)	addElement() (in MergeTuple)	annotate (in libSBAnnotation)
abstract_test() (in libTI2.solvers.abstract_fortran_solver)	addElement() (in MergedModel)	annotate (in semanticSBML)
AbstractItem (in libSBAnnotation.indexedTables)	addElementToTuple() (in Merger)	annotate() (in SemanticSbmlGui_doc)
AbstractItem (in libSBAnnotation.tables)	addElementView() (in Tuple_widget)	annotate_imported (in libSBtab.Value)
AbstractItemRelation (in libSBAnnotation.indexedTables)	adder (in libTI2.add_new_kinetics)	Annotation (in libModelSimilarity.fake_annotations)
AbstractItemRelation (in libSBAnnotation.tables)	addGene() (in Database)	Annotation (in libSBAnnotation.annotate)
ACCEPTED_DATATYPES (in libSBtab.Parser)	addItem() (in Database)	annotation_check() (in Checker)
ACCEPTED_NAN (in libSBtab.Parser)	additional_information_handler (in libTI2.model)	annotation_clipboard (in semanticSBMLgui.gui_view_annotate)
ACCEPTED_UNITS (in libSBtab.Parser)	additional_information_handler (in libTI2.model.additional_information_handler)	annotation_count (in libModelSimilarity.calc_bimatrix)
Action() (in libSBtab.Column)	additionalValue() (in ID)	Annotation_view (in semanticSBMLgui.gui_view_annotate)
activateColumns() (in Table)	additionalValue() (in Value)	Annotation_view (in semanticSBMLui.console_views)
add() (in Constraint)	addMergedElement() (in Tuple_widget)	AnnotationCreationError (in libSBAnnotation.annotate)
add() (in Annotation_view)	addNewRow() (in Table)	AnnotationDatabaseError (in libSBAnnotation.annotate)
add_aim() (in cpsfile)	addNickname() (in Document)	AnnotationError (in libSBAnnotation.annotate)
add_artificial_activation_inhibitions() (in pre_defined_formulas)	addOrganism() (in Database)	AnnotationInformationObject (in libModelSimilarity.calc_bimatrix)
add_artificial_inhibitions() (in pre_defined_formulas)	addReaction() (in Database)	AnnotationObject (in libSBAnnotation.database)
add_artificial_noncompetitive_inhibitions() (in pre_defined_formulas)	addReference() (in Table)	AnnotationsInModels (in libModelSimilarity.calc_bimatrix)
add_data() (in simulation_data_handler)	addRelation() (in ExtendedRelationObject)	annotationStatistics() (in DatabaseAnnotation)
add_data_in_sd_format() (in simulation_data_handler)	addRelation() (in RelationObject)	annotationStatistics() (in DatabaseAnnotation)
add_database_object_data_to_outstring() (in GenerateSBtab)	addRelationship() (in Database)	annotationStatistics() (in DatabaseAnnotation)
add_error() (in CheckResult)	addRelationshipByNames() (in Database)	Annotator (in semanticSBML.annotate)
add_formula_and_artificial_inhibition_to_known_formulas() (in rre_generator)	addRequiredColumns() (in Table)	aorga() (in libPyless.pyless)
add_info() (in CheckResult)	addSBOTerm() (in Database)	aorga_wrapper() (in model_reduction)
add_link() (in children_linker)	addSboTerm() (in Model)	append_formula_or_link() (in flat_formula_database_parser)
add_more_products_to_irreversible_reactions() (in pre_defined_formulas)	addSboTerm() (in SemanticSbmlGui_doc)	appendRow() (in Table)
add_new_kinetics (in libTI2)	addSpecies() (in Database)	apply_caching (in libModelSimilarity.bicluster.bicluster)
add_parameter_estimation() (in cpsfile)	addStAnAnnotationLink() (in SemanticSbmlGui_doc)	apply_caching (in libModelSimilarity.cluster)
add_qsms (in libModelSimilarity.calc_bimatrix)	addTable() (in Document)	apply_caching (in libModelSimilarity.okapicluster)
add_reaction() (in cpsfile)	addTables() (in Document)	apply_caching (in libModelSimilarity.wolfscluster)
add_result() (in CheckResult)	addToBeKnown() (in Table)	arccos() (in DerivVar)
add_sboterm() (in sbotree)	addToListOfImportedDatabases() (in Database)	arcsin() (in DerivVar)
add_sboterms	addTupleCandidate() (in OriginElement)	arctan() (in DerivVar)
add_sboterms_to_complete_file() (in add_sboterms)	addTupleCandidates() (in OriginElement)	arctan2() (in DerivVar)
add_sboterms_to_libsbml_reaction() (in add_sboterms)	addView() (in SemanticSbmlGui_docmgr)	array_kind (in MathArrayFunc)
add_sboterms_to_sbml (in libTI2)	after_copy_functions() (in Model)	array_precision (in MathArrayFunc)
add_search() (in Annotation_view)	akdes_files() (in libModelSimilarity.bicluster.interpret_bicluster)	array_type (in MathArrayFunc)
add_species() (in cpsfile)	all_tops (in libModelSimilarity.cluster)	arrayify() (in model_reduction)
add_suggestion() (in Annotation_view)	all_tops (in libModelSimilarity.okapicluster)	assertRank2() (in MathArrayFunc)
add_volume() (in pre_defined_formulas)	all_tops (in libModelSimilarity.wolfscluster)	assignment_rule_replace() (in Model)
add_warning() (in CheckResult)	ALLOWED_DIGITS (in libSBtab.Value)	attributeGet() (in Row)
addAnnotation() (in ElementAnnotations)	AllysonEdgesRead (in libSBAnnotation.buildDB)	attributePresent() (in Row)
addAnnotationAutomatic() (in ElementAnnotations)	AllysonNodesRead (in libSBAnnotation.buildDB)	attributeSet() (in Row)
addAnnotationLink() (in Model)	alt (in libSBAnnotation.annotate)	autocorrelation() (in model_reduction)