[ Identifiers | Bugs ]

Identifier Index

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M

main() (in libModelSimilarity.compareModels)	mathml2fortran() (in libTI2.solvers.abstract_fortran_solver)	miriam2internal (in libModelSimilarity.okapicluster)
main() (in libModelSimilarity.eTVSM)	mathml2scipy() (in Model)	miriam2internal (in libModelSimilarity.wolfscluster)
main() (in libTI2.optimize.nnca)	mathmldic (in libTI2.model.sboreader)	MissingRootTag (in libSBAnnotation.xmlobject)
make_A_matrix() (in Parameter_balancing)	mathmlfunc (in libTI2.model.sboreader)	MissingRootTag (in semanticSBML.xmlobject)
make_default_table() (in Parameter_balancing)	mathmlignore (in libTI2.model.sboreader)	modAnnotation() (in ElementAnnotations)
make_eq_matrix() (in Parameter_balancing)	mathmlparser (in libTI2.model.sboreader)	mode2params (in kineticizer)
make_fancy_deflist() (in __database)	MathTransformation() (in libSBtab.Column)	model (in libTI2)
make_fancy_namelist() (in __database)	matrix() (in DatabaseAnnotation)	model (in libTI2.model)
make_first_matrix() (in Parameter_balancing)	matrix() (in DatabaseAnnotation)	Model (in libTI2.model.model)
make_formula_fortran_compatible() (in abstract_fortran_solver)	matrix() (in DatabaseAnnotation)	Model (in semanticSBML)
make_kcat_matrix() (in Parameter_balancing)	matrix_lanczos() (in libPyless.pyless)	Model (in semanticSBML.Model)
make_meta_ids() (in semanticSBML.sbmlmisc)	matrix_to_greedy_sim_list() (in CompareModels)	model_number2cluster (in libModelSimilarity.bicluster.interpret_bicluster)
make_mu_matrix() (in Parameter_balancing)	matrix_to_sim_list() (in CompareModels)	model_number2cluster (in libModelSimilarity.bicluster.interpret_nnmf)
make_posteriori() (in Parameter_balancing)	MatrixFloatFix() (in MathArrayFunc)	model_qualifier_type2name (in semanticSBML.annotate)
make_spaces_in_formula() (in libTI2.optimize.nnca)	MatrixValueCompare() (in MathArrayFunc)	model_qualifiers (in libSBAnnotation.annotate)
make_valid_xml_id() (in semanticSBML.sbmlmisc)	max_line_steps (in libTI2.laotide)	model_qualifiers (in semanticSBML.annotate)
make_vmax_matrix() (in Parameter_balancing)	max_number_species (in semanticSBML.sbml2dot)	model_reduction (in libPyless.pyless)
makeAnnotationMenu() (in Annotation_view)	mca() (in Model)	model_reduction (in libPyless.pyless2)
makeBalanceView() (in Balance_view)	mca_ss() (in Model)	ModelAnnotation (in libModelSimilarity.bicluster.bicluster)
makeCollisionMenu() (in Merge_view)	Mean() (in libSBtab.Column)	ModelAnnotation
makeCopyDoc() (in Merger)	mean_over_multiples_reaction() (in Parameter_balancing)	ModelAnnotation (in libModelSimilarity.okapicluster)
makeDefaultTab() (in Balance_view)	mean_over_multiples_species() (in Parameter_balancing)	ModelAnnotation (in libModelSimilarity.wolfscluster)
makeDeleteGroupBox() (in Annotation_view)	merge (in semanticSBML)	ModelElementsAnnotations (in libModelSimilarity.fake_annotations)
makeDeleteGroupBoxSbo() (in Annotation_view)	merge() (in SemanticSbmlGui_doc)	ModelElementsAnnotations (in semanticSBML.annotate)
makeDeleteGroupBoxSboForUnchosenElements() (in Annotation_view)	merge_datamodel (in semanticSBML)	modelqual_name2desc (in semanticSBML.annotate)
makeFinalTab() (in Balance_view)	Merge_Element_view (in semanticSBMLgui.gui_view_merge)	modelqual_name2type (in semanticSBML.annotate)
makeInfMenu() (in Annotation_view)	merge_logic (in semanticSBML)	ModelSbo
makeInitMenu() (in Id2Sbml_view)	merge_table() (in Merge_view)	modifierarrowhead (in semanticSBML.sbml2dot)
makeInitMenu() (in Id2Sbml_view)	Merge_view (in semanticSBMLgui.gui_view_merge)	modifierarrowstyle (in semanticSBML.sbml2dot)
makeKinMenu() (in Annotation_view)	Merge_view (in semanticSBMLui.console_views)	modifierarrowtail (in semanticSBML.sbml2dot)
makeListView() (in Check_view)	MergeBase (in semanticSBML.merge_datamodel)	modify() (in SemanticSbmlGui_doc)
makeMenu() (in Annotation_view)	MergeBioQuantityLocationError (in semanticSBML.merge_datamodel)	mqr (in libSBAnnotation.annotate)
makeModMenu() (in Annotation_view)	Merged_Element_view (in semanticSBMLgui.gui_view_merge)	mqr (in semanticSBML.annotate)
makeOptions() (in Balance_view)	MergedElement (in semanticSBML.merge)	mqr (in semanticSBMLui.docmanager)
makeParMenu() (in Annotation_view)	MergedModel (in semanticSBML.merge_datamodel)	msg (in NoValueGivenError)
makeSBML() (in Convert2SBML)	MergeError (in semanticSBML.merge_datamodel)	msg (in ValueNotKnownError)
makeSboMenu() (in Annotation_view)	mergeQuantity() (in ColumnProxy)	msg (in BoolParserWarning)
makeSBTab() (in Convert2SBTab)	Merger (in semanticSBML.merge)	msg (in ColumnParserWarning)
makeSBtab() (in Parameter_balancing)	mergeTable() (in Table)	msg (in DatabaseParserWarning)
makeSBtabTab() (in Balance_view)	MergeTuple (in semanticSBML.merge)	msg (in NicknameParserWarning)
makeStAnMenu() (in Annotation_view)	MergeTupleError (in semanticSBML.merge)	msg (in ParserWarning)
makeStAnMenu() (in Annotation_view)	message() (in Checker)	msg (in semanticSBML.annotate)
makeTreeView() (in Annotation_view)	Meta_DB (in libSBAnnotation.database_new)	mtoi() (in libTI2.laotide)
makeTreeView() (in Annotation_view)	MetaboliteData (in libSBtab.Row)	multigcd() (in libSBtab.Value)
makeUpdatedSBtab() (in Balance_view)	MetaboliteDataTable (in libSBtab.Table)	multiply_shift_factor() (in Model)
makeWolf() (in Parameter_balancing)	MetaInformation (in libSBtab.Row)	multiReference() (in Row)
manualResolve() (in Merge_view)	middlecolor (in semanticSBML.sbml2dot)	must_be_known() (in libSBtab.Validator)
mapping (in Document)	minus_start (in libPyless.pyless)	mycsv (in libModelSimilarity.calc_bimatrix)
Mass() (in libSBtab.Column)	minus_start (in libPyless.pyless2)	mydifflib (in libSBAnnotation)
MathArrayFunc (in libPyless.pylessPyscesStoich)	miriam2internal (in libModelSimilarity.bicluster.bicluster)
MathDescriptor() (in libSBtab.Column)	miriam2internal (in libModelSimilarity.cluster)