SemanticSBML publications

Publications and theses related to semanticSBML

  1. Parameter balancing in kinetic models
    Lubitz T. (2010), Master thesis [pdf]
  2. Annotation and merging of SBML models with semanticSBML
    Krause F, Uhlendorf J., Lubitz T., Schulz M., Klipp E., Liebermeister W. (2009)
    Bioinformatics 2009, doi:10.1093/bioinformatics/btp642 [html]
  3. Combination of mathematical model of signaling pathways
    Kosenko A. (2009), Bachelor thesis [pdf]
  4. A simple clustering of the BioModels database using semanticSBML
    Krause F. and Liebermeister W. (2009), Poster on [Nature Precedings ]
  5. SemanticSBML: a tool for annotating, checking, and merging of biochemical models in SBML format
    Liebermeister W., Krause F., Uhlendorf J., Lubitz T., Klipp E. (2009), Poster on [Nature Precedings ]
  6. SemanticSBML, a Tool for Creating, Checking, Annotating and Merging of SBML Documents
    Krause F. (2008), Master thesis [pdf]
  7. Validity and combination of biochemical models
    Liebermeister W. (2008), Proceedings of 3rd International ESCEC Workshop on Experimental Standard Conditions on Enzyme Characterizations. [html]
  8. Merging of systems biology models with semanticSBML
    Liebermeister W., Krause F., Klipp E. (2008), 5th Workshop on Computation of Biochemical Pathways and Genetic Networks.
  9. SBMLmerge, a system for combining biochemical network models
    Schulz M., Uhlendorf J., Klipp E., Liebermeister W. (2006), Genome Informatics Series 17 (1).