In Systems Biology models are created in various formats. So far only few formats (like SBML) allow the annotation of the biological context of a model. This service will help you to link your model to biological web resources by creating a CSV file containing MIRIAM annotations
You can upload your model as a .zip archive. The archive will be scanned for files with comments of the format:
- Matlab
% model variables
% var1,var2,var3
% end variables
- R
# model variables
# var1,var2,var3
# end variables
- Java
// model variables
// var1,var2,var3
// end variables
- C/C++
// model variables
// var1,var2,var3
// end variables
- Python
# model variables
# var1,var2,var3
# end variables
Alternatively you can add variables by hand using the box below the upload from. If the uploaded .zip file already contains a MIRIAM.csv file the annotations from this file will be read and you can update the annotations.
Once you have annotated your model you will be able to
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search for similar BioModels using the new services of semanticSBML 2.0,
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view the hightlighted source code of you model. The highlighing includes direct hyperlinks to the annotated resources.
